PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g042130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 186aa    MW: 21706 Da    PI: 9.7837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g042130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.42.3e-2713107190
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                     f  v t++dv+k++rlvlp++ ae+h     +++++++ l+++d++g+ W+++++y+++ g+yv+tkGW++Fvk+++L+egD+v F++  g++++
  Csa12g042130.1  13 FHIVVTSNDVGKLNRLVLPRQDAERHfppyASNNQNGTLLSFQDKNGKMWRFRYSYWNTLGTYVMTKGWSRFVKEKKLEEGDMVSFERGfGDESE 107
                     6678899***********************66677889*************************************************66444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-357119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-279112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-2311100No hitNo description
PROSITE profilePS5086314.12813117IPR003340B3 DNA binding domain
PfamPF023628.8E-2513107IPR003340B3 DNA binding domain
SMARTSM010192.9E-1813119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MMMVPAPKKE HMFHIVVTSN DVGKLNRLVL PRQDAERHFP PYASNNQNGT LLSFQDKNGK  60
MWRFRYSYWN TLGTYVMTKG WSRFVKEKKL EEGDMVSFER GFGDESERWK LYIDWSHRRD  120
MSLVQSHQFA KDIIDFLCVQ KDLGDSNALV GRLSAACERR GIKPKDNPFR SLAVIRYLQM  180
VEAFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-381012311122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638739.16e-69PREDICTED: B3 domain-containing transcription factor NGA3
RefseqXP_013666354.16e-69PREDICTED: B3 domain-containing transcription factor NGA3
RefseqXP_013666355.16e-69PREDICTED: B3 domain-containing transcription factor NGA3
RefseqXP_013696948.16e-69PREDICTED: B3 domain-containing transcription factor NGA3-like
SwissprotQ9MAN17e-70NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A078DL816e-69A0A078DL81_BRANA; BnaA10g00810D protein
TrEMBLA0A078FSD65e-69A0A078FSD6_BRANA; BnaC05g00870D protein
TrEMBLA0A0D3C7107e-69A0A0D3C710_BRAOL; Uncharacterized protein
STRINGAT1G01030.12e-67(Arabidopsis thaliana)
STRINGfgenesh2_kg.1__134__AT1G01030.11e-67(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-71B3 family protein